'54 Hornet Coupe Unibody Frame rails - preserve

My passenger side is being replace under door but before I replace with new inner and outer rocker panels, I would like to preserve what I have in the rest of the car. Can anyone offer any advice for cleaning out loose rust and other crud in the existing  frame boxes on the inside? Also, can anyone offer an idea for coating the insides of the boxes with a rust reformer? Right now everywhere else is solid - I would like to keep it that way.

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